3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
UCGACC*GAAA*UA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8YUQ_027 not in the Motif Atlas
Homologous match to J3_5J7L_043
Geometric discrepancy: 0.0903
The information below is about J3_5J7L_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92705.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

8YUQ|1|a|U|1344
8YUQ|1|a|C|1345
8YUQ|1|a|G|1346
8YUQ|1|a|A|1347
8YUQ|1|a|C|1348
8YUQ|1|a|C|1349
*
8YUQ|1|a|G|1382
8YUQ|1|a|A|1383
8YUQ|1|a|A|1384
8YUQ|1|a|A|1385
*
8YUQ|1|a|U|1402
8YUQ|1|a|A|1403

Current chains

Chain a
23S rRNA

Nearby chains

Chain s
50S ribosomal protein L23

Coloring options:


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