J3_8YUS_022

3D structure

PDB id

8YUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P.putida tRNAIle2 and A(F)4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8YUS|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUS_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.061

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YUS|1|a|G|297
8YUS|1|a|G|298
8YUS|1|a|A|299
8YUS|1|a|A|300
8YUS|1|a|G|301
*
8YUS|1|a|C|316
8YUS|1|a|G|317
8YUS|1|a|C|318
8YUS|1|a|G|319
8YUS|1|a|A|320
8YUS|1|a|U|321
8YUS|1|a|A|322
8YUS|1|a|C|323
8YUS|1|a|A|324
8YUS|1|a|G|325
*
8YUS|1|a|C|337
8YUS|1|a|G|338
8YUS|1|a|U|339
8YUS|1|a|A|340
8YUS|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24