J3_8Z70_003

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8Z70|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z70|1|2|A|213
8Z70|1|2|G|214
8Z70|1|2|A|215
8Z70|1|2|U|216
8Z70|1|2|A|217
8Z70|1|2|A|218
8Z70|1|2|A|219
8Z70|1|2|A|220
8Z70|1|2|A|221
8Z70|1|2|A|222
8Z70|1|2|U|223
8Z70|1|2|C|224
8Z70|1|2|A|225
8Z70|1|2|A|226
8Z70|1|2|U|227
8Z70|1|2|G|228
*
8Z70|1|2|C|237
8Z70|1|2|U|238
8Z70|1|2|C|239
8Z70|1|2|U|240
8Z70|1|2|U|241
8Z70|1|2|U|242
8Z70|1|2|G|243
*
8Z70|1|2|C|250
8Z70|1|2|A|251
8Z70|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SX

Small ribosomal subunit protein uS17A