3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
8Z70|1|2|G|1199, 8Z70|1|2|G|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Z70_011 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.096
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

8Z70|1|2|C|1180
8Z70|1|2|U|1181
8Z70|1|2|U|1182
8Z70|1|2|A|1183
8Z70|1|2|A|1184
8Z70|1|2|U|1185
8Z70|1|2|U|1186
8Z70|1|2|U|1187
*
8Z70|1|2|G|1198
8Z70|1|2|G|1199
8Z70|1|2|G|1200
8Z70|1|2|G|1201
8Z70|1|2|A|1202
8Z70|1|2|A|1203
8Z70|1|2|A|1204
8Z70|1|2|C|1205
8Z70|1|2|U|1206
8Z70|1|2|C|1207
8Z70|1|2|A|1208
8Z70|1|2|C|1209
*
8Z70|1|2|G|1454
8Z70|1|2|G|1455
8Z70|1|2|C|1456
8Z70|1|2|C|1457
8Z70|1|2|G|1458

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein uS19
Chain SH
Small ribosomal subunit protein uS13A
Chain SJ
Small ribosomal subunit protein uS10
Chain SM
Small ribosomal subunit protein uS14A
Chain SN
Small ribosomal subunit protein eS31

Coloring options:


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