J3_8Z71_003

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8Z71|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z71|1|2|A|213
8Z71|1|2|G|214
8Z71|1|2|A|215
8Z71|1|2|U|216
8Z71|1|2|A|217
8Z71|1|2|A|218
8Z71|1|2|A|219
8Z71|1|2|A|220
8Z71|1|2|A|221
8Z71|1|2|A|222
8Z71|1|2|U|223
8Z71|1|2|C|224
8Z71|1|2|A|225
8Z71|1|2|A|226
8Z71|1|2|U|227
8Z71|1|2|G|228
*
8Z71|1|2|C|237
8Z71|1|2|U|238
8Z71|1|2|C|239
8Z71|1|2|U|240
8Z71|1|2|U|241
8Z71|1|2|U|242
8Z71|1|2|G|243
*
8Z71|1|2|C|250
8Z71|1|2|A|251
8Z71|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SX

Small ribosomal subunit protein uS17A