J3_8Z71_013
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Z71_013 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3291
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8Z71|1|2|U|1283
8Z71|1|2|C|1284
8Z71|1|2|U|1285
8Z71|1|2|U|1286
8Z71|1|2|A|1287
8Z71|1|2|G|1288
*
8Z71|1|2|C|1327
8Z71|1|2|G|1328
8Z71|1|2|A|1329
8Z71|1|2|G|1330
8Z71|1|2|A|1331
8Z71|1|2|C|1332
*
8Z71|1|2|G|1419
8Z71|1|2|C|1420
8Z71|1|2|A|1421
8Z71|1|2|A|1422
8Z71|1|2|U|1423
8Z71|1|2|A|1424
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SR
- Small ribosomal subunit protein uS5
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