J3_8Z71_020
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACCGAUAGCGAACAAGUAC*GGAAAG*CUUGGU
- Length
- 32 nucleotides
- Bulged bases
- 8Z71|1|A|A|338, 8Z71|1|A|U|343, 8Z71|1|A|A|351, 8Z71|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z71|1|A|G|337
8Z71|1|A|A|338
8Z71|1|A|C|339
8Z71|1|A|C|340
8Z71|1|A|G|341
8Z71|1|A|A|342
8Z71|1|A|U|343
8Z71|1|A|A|344
8Z71|1|A|G|345
8Z71|1|A|C|346
8Z71|1|A|G|347
8Z71|1|A|A|348
8Z71|1|A|A|349
8Z71|1|A|C|350
8Z71|1|A|A|351
8Z71|1|A|A|352
8Z71|1|A|G|353
8Z71|1|A|U|354
8Z71|1|A|A|355
8Z71|1|A|C|356
*
8Z71|1|A|G|363
8Z71|1|A|G|364
8Z71|1|A|A|365
8Z71|1|A|A|366
8Z71|1|A|A|367
8Z71|1|A|G|368
*
8Z71|1|C|C|21
8Z71|1|C|U|22
8Z71|1|C|U|23
8Z71|1|C|G|24
8Z71|1|C|G|25
8Z71|1|C|U|26
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain a
- Large ribosomal subunit protein uL24A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: