J3_8Z71_021

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACGUGAAAU*ACGGAUCU

Length

40 nucleotides

Bulged bases

8Z71|1|A|A|398, 8Z71|1|A|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z71|1|A|A|369
8Z71|1|A|U|370
8Z71|1|A|G|371
8Z71|1|A|A|372
8Z71|1|A|A|373
8Z71|1|A|A|374
8Z71|1|A|A|375
8Z71|1|A|G|376
8Z71|1|A|A|377
8Z71|1|A|A|378
8Z71|1|A|C|379
*
8Z71|1|A|G|390
8Z71|1|A|A|391
8Z71|1|A|G|392
8Z71|1|A|U|393
8Z71|1|A|G|394
8Z71|1|A|A|395
8Z71|1|A|A|396
8Z71|1|A|A|397
8Z71|1|A|A|398
8Z71|1|A|A|399
8Z71|1|A|G|400
8Z71|1|A|U|401
8Z71|1|A|A|402
8Z71|1|A|C|403
8Z71|1|A|G|404
8Z71|1|A|U|405
8Z71|1|A|G|406
8Z71|1|A|A|407
8Z71|1|A|A|408
8Z71|1|A|A|409
8Z71|1|A|U|410
*
8Z71|1|C|A|13
8Z71|1|C|C|14
8Z71|1|C|G|15
8Z71|1|C|G|16
8Z71|1|C|A|17
8Z71|1|C|U|18
8Z71|1|C|C|19
8Z71|1|C|U|20

Current chains

Chain A

25S rRNA

Chain C

5.8S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain R

Large ribosomal subunit protein uL22A

Chain a

Large ribosomal subunit protein uL24A

Chain g

Large ribosomal subunit protein eL32

Chain n

Large ribosomal subunit protein eL39