J3_8Z71_033
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAGCUGG*CACGUUCUAGCAUUCAAG*UGAUCC
- Length
- 32 nucleotides
- Bulged bases
- 8Z71|1|A|G|2549, 8Z71|1|A|U|2550, 8Z71|1|A|U|2551, 8Z71|1|A|A|2554, 8Z71|1|A|A|2557, 8Z71|1|A|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Z71|1|A|G|2527
8Z71|1|A|G|2528
8Z71|1|A|A|2529
8Z71|1|A|G|2530
8Z71|1|A|C|2531
8Z71|1|A|U|2532
8Z71|1|A|G|2533
8Z71|1|A|G|2534
*
8Z71|1|A|C|2546
8Z71|1|A|A|2547
8Z71|1|A|C|2548
8Z71|1|A|G|2549
8Z71|1|A|U|2550
8Z71|1|A|U|2551
8Z71|1|A|C|2552
8Z71|1|A|U|2553
8Z71|1|A|A|2554
8Z71|1|A|G|2555
8Z71|1|A|C|2556
8Z71|1|A|A|2557
8Z71|1|A|U|2558
8Z71|1|A|U|2559
8Z71|1|A|C|2560
8Z71|1|A|A|2561
8Z71|1|A|A|2562
8Z71|1|A|G|2563
*
8Z71|1|A|U|2578
8Z71|1|A|G|2579
8Z71|1|A|A|2580
8Z71|1|A|U|2581
8Z71|1|A|C|2582
8Z71|1|A|C|2583
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain b
- Large ribosomal subunit protein eL27A
- Chain e
- Large ribosomal subunit protein eL30
- Chain i
- Large ribosomal subunit protein eL34A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: