J3_8Z71_037

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAU

Length

32 nucleotides

Bulged bases

8Z71|1|A|A|3172, 8Z71|1|A|G|3173, 8Z71|1|A|A|3215, 8Z71|1|A|G|3216, 8Z71|1|A|C|3217, 8Z71|1|A|G|3219, 8Z71|1|A|A|3268, 8Z71|1|A|U|3270, 8Z71|1|A|C|3272, 8Z71|1|A|U|3277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Z71|1|A|A|3170
8Z71|1|A|U|3171
8Z71|1|A|A|3172
8Z71|1|A|G|3173
8Z71|1|A|A|3174
8Z71|1|A|U|3175
8Z71|1|A|G|3176
*
8Z71|1|A|C|3212
8Z71|1|A|A|3213
8Z71|1|A|U|3214
8Z71|1|A|A|3215
8Z71|1|A|G|3216
8Z71|1|A|C|3217
8Z71|1|A|A|3218
8Z71|1|A|G|3219
8Z71|1|A|G|3220
*
8Z71|1|A|C|3265
8Z71|1|A|G|3266
8Z71|1|A|A|3267
8Z71|1|A|A|3268
8Z71|1|A|U|3269
8Z71|1|A|U|3270
8Z71|1|A|G|3271
8Z71|1|A|C|3272
8Z71|1|A|A|3273
8Z71|1|A|A|3274
8Z71|1|A|U|3275
8Z71|1|A|G|3276
8Z71|1|A|U|3277
8Z71|1|A|C|3278
8Z71|1|A|A|3279
8Z71|1|A|U|3280

Current chains

Chain A

25S rRNA

Nearby chains

Chain H

Large ribosomal subunit protein eL6B

Chain O

Large ribosomal subunit protein eL14A

Chain Q

Large ribosomal subunit protein uL13A

Chain R

Large ribosomal subunit protein uL22A

Chain h

Large ribosomal subunit protein eL33A