J3_8ZDB_008
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8ZDB|1|2|G|1256, 8ZDB|1|2|A|1258, 8ZDB|1|2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZDB_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1311
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8ZDB|1|2|C|1237
8ZDB|1|2|U|1238
8ZDB|1|2|U|1239
8ZDB|1|2|A|1240
8ZDB|1|2|A|1241
8ZDB|1|2|U|1242
8ZDB|1|2|U|1243
8ZDB|1|2|U|1244
*
8ZDB|1|2|G|1255
8ZDB|1|2|G|1256
8ZDB|1|2|G|1257
8ZDB|1|2|A|1258
8ZDB|1|2|A|1259
8ZDB|1|2|A|1260
8ZDB|1|2|C|1261
8ZDB|1|2|C|1262
8ZDB|1|2|U|1263
8ZDB|1|2|C|1264
8ZDB|1|2|A|1265
8ZDB|1|2|C|1266
*
8ZDB|1|2|G|1516
8ZDB|1|2|G|1517
8ZDB|1|2|C|1518
8ZDB|1|2|U|1519
8ZDB|1|2|G|1520
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein uS19
- Chain S
- Small ribosomal subunit protein uS13
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Ubiquitin
- Chain p
- Serine/threonine-protein kinase RIO3
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