J3_8ZDD_004
3D structure
- PDB id
- 8ZDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGGA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 8ZDD|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZDD|1|2|U|682
8ZDD|1|2|G|683
8ZDD|1|2|G|684
8ZDD|1|2|A|685
*
8ZDD|1|2|U|917
8ZDD|1|2|U|918
8ZDD|1|2|A|919
8ZDD|1|2|A|920
8ZDD|1|2|G|921
8ZDD|1|2|A|922
8ZDD|1|2|G|923
*
8ZDD|1|2|C|1019
8ZDD|1|2|A|1020
8ZDD|1|2|U|1021
8ZDD|1|2|U|1022
8ZDD|1|2|A|1023
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein eS7
- Chain L
- Small ribosomal subunit protein uS17
- Chain N
- Small ribosomal subunit protein uS15
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- Small ribosomal subunit protein uS12
- Chain b
- Small ribosomal subunit protein eS27
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