J3_8ZDD_013

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UGUCUGG*CGAUAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDD|1|2|U|1350
8ZDD|1|2|G|1351
*
8ZDD|1|2|U|1360
8ZDD|1|2|G|1361
8ZDD|1|2|U|1362
8ZDD|1|2|C|1363
8ZDD|1|2|U|1364
8ZDD|1|2|G|1365
8ZDD|1|2|G|1366
*
8ZDD|1|2|C|1374
8ZDD|1|2|G|1375
8ZDD|1|2|A|1376
8ZDD|1|2|U|1377
8ZDD|1|2|A|1378
8ZDD|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain C

Small ribosomal subunit protein uS5

Chain R

Small ribosomal subunit protein eS17