J3_8ZDD_015

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

8ZDD|1|2|U|1535, 8ZDD|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDD|1|2|C|1532
8ZDD|1|2|A|1533
8ZDD|1|2|C|1534
8ZDD|1|2|U|1535
8ZDD|1|2|G|1536
*
8ZDD|1|2|C|1597
8ZDD|1|2|G|1598
8ZDD|1|2|U|1599
8ZDD|1|2|G|1600
8ZDD|1|2|A|1601
8ZDD|1|2|U|1602
8ZDD|1|2|G|1603
8ZDD|1|2|G|1604
*
8ZDD|1|2|C|1635
8ZDD|1|2|G|1636
8ZDD|1|2|A|1637
8ZDD|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain Z

Small ribosomal subunit protein eS25