J3_8ZFF_035

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8ZFF|1|a|U|2833, 8ZFF|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFF|1|a|G|2812
8ZFF|1|a|A|2813
8ZFF|1|a|A|2814
8ZFF|1|a|C|2815
*
8ZFF|1|a|G|2831
8ZFF|1|a|U|2832
8ZFF|1|a|U|2833
8ZFF|1|a|G|2834
8ZFF|1|a|A|2835
8ZFF|1|a|U|2836
*
8ZFF|1|a|A|2882
8ZFF|1|a|A|2883
8ZFF|1|a|U|2884
8ZFF|1|a|G|2885
8ZFF|1|a|A|2886
8ZFF|1|a|A|2887
8ZFF|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32