J3_8ZFF_036

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

8ZFF|1|b|U|14, 8ZFF|1|b|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFF|1|b|G|10
8ZFF|1|b|C|11
8ZFF|1|b|C|12
8ZFF|1|b|G|13
8ZFF|1|b|U|14
8ZFF|1|b|A|15
8ZFF|1|b|G|16
*
8ZFF|1|b|C|68
8ZFF|1|b|G|69
8ZFF|1|b|C|70
*
8ZFF|1|b|G|106
8ZFF|1|b|G|107
8ZFF|1|b|A|108
8ZFF|1|b|A|109
8ZFF|1|b|C|110

Current chains

Chain b

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain n

Large ribosomal subunit protein uL18

Chain u

Large ribosomal subunit protein bL25

Chain v

Large ribosomal subunit protein bL27