J3_8ZFG_020
3D structure
- PDB id
- 8ZFG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.68 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8ZFG|1|a|U|34, 8ZFG|1|a|U|448, 8ZFG|1|a|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZFG_020 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.3775
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8ZFG|1|a|C|32
8ZFG|1|a|C|33
8ZFG|1|a|U|34
8ZFG|1|a|G|35
*
8ZFG|1|a|C|445
8ZFG|1|a|G|446
8ZFG|1|a|A|447
8ZFG|1|a|U|448
8ZFG|1|a|A|449
8ZFG|1|a|G|450
8ZFG|1|a|U|451
8ZFG|1|a|G|452
8ZFG|1|a|A|453
8ZFG|1|a|A|454
8ZFG|1|a|C|455
8ZFG|1|a|C|456
8ZFG|1|a|A|457
8ZFG|1|a|G|458
8ZFG|1|a|U|459
8ZFG|1|a|A|460
8ZFG|1|a|C|461
*
8ZFG|1|a|G|468
8ZFG|1|a|G|469
8ZFG|1|a|A|470
8ZFG|1|a|A|471
8ZFG|1|a|A|472
8ZFG|1|a|G|473
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain e
- Large ribosomal subunit protein uL4
- Chain p
- Large ribosomal subunit protein bL20
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: