J3_8ZFG_035

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8ZFG|1|a|U|2833, 8ZFG|1|a|A|2835, 8ZFG|1|a|U|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFG|1|a|G|2812
8ZFG|1|a|A|2813
8ZFG|1|a|A|2814
8ZFG|1|a|C|2815
*
8ZFG|1|a|G|2831
8ZFG|1|a|U|2832
8ZFG|1|a|U|2833
8ZFG|1|a|G|2834
8ZFG|1|a|A|2835
8ZFG|1|a|U|2836
*
8ZFG|1|a|A|2882
8ZFG|1|a|A|2883
8ZFG|1|a|U|2884
8ZFG|1|a|G|2885
8ZFG|1|a|A|2886
8ZFG|1|a|A|2887
8ZFG|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32