J3_8ZFI_001

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFI_001 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.2029

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8ZFI|1|A|G|46
8ZFI|1|A|C|47
*
8ZFI|1|A|G|361
8ZFI|1|A|G|362
8ZFI|1|A|A|363
8ZFI|1|A|A|364
8ZFI|1|A|U|365
8ZFI|1|A|A|366
8ZFI|1|A|U|367
*
8ZFI|1|A|A|393
8ZFI|1|A|G|394
8ZFI|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

30S ribosomal protein S16