J3_8ZFI_017
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8ZFI|1|a|U|14, 8ZFI|1|a|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZFI_017 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.1643
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8ZFI|1|a|G|10
8ZFI|1|a|C|11
8ZFI|1|a|C|12
8ZFI|1|a|G|13
8ZFI|1|a|U|14
8ZFI|1|a|A|15
8ZFI|1|a|G|16
*
8ZFI|1|a|C|68
8ZFI|1|a|G|69
8ZFI|1|a|C|70
*
8ZFI|1|a|G|106
8ZFI|1|a|G|107
8ZFI|1|a|A|108
8ZFI|1|a|A|109
8ZFI|1|a|C|110
Current chains
- Chain a
- 5S rRNA
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain p
- 50S ribosomal protein L18
- Chain y
- 50S ribosomal protein L27
Coloring options: