J3_8ZFI_018

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFI_018 not in the Motif Atlas

Geometric match to J3_8P9A_046

Geometric discrepancy: 0.1288

The information below is about J3_8P9A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8ZFI|1|b|G|30
8ZFI|1|b|C|31
*
8ZFI|1|b|G|474
8ZFI|1|b|C|475
8ZFI|1|b|G|476
8ZFI|1|b|A|477
8ZFI|1|b|A|478
8ZFI|1|b|A|479
8ZFI|1|b|A|480
8ZFI|1|b|G|481
*
8ZFI|1|b|C|509
8ZFI|1|b|C|510

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain r

50S ribosomal protein L20

Chain v

50S ribosomal protein L24

Chain z

eRAP-NC