J3_8ZFI_022

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8ZFI|1|b|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFI_022 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0916

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZFI|1|b|G|297
8ZFI|1|b|G|298
8ZFI|1|b|A|299
8ZFI|1|b|A|300
8ZFI|1|b|G|301
*
8ZFI|1|b|C|316
8ZFI|1|b|G|317
8ZFI|1|b|C|318
8ZFI|1|b|G|319
8ZFI|1|b|A|320
8ZFI|1|b|U|321
8ZFI|1|b|A|322
8ZFI|1|b|C|323
8ZFI|1|b|A|324
8ZFI|1|b|G|325
*
8ZFI|1|b|C|337
8ZFI|1|b|G|338
8ZFI|1|b|U|339
8ZFI|1|b|A|340
8ZFI|1|b|C|341

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain e

50S ribosomal protein L4

Chain v

50S ribosomal protein L24