J3_8ZFI_025

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGGAUGUUGG*CAUCAUUUAAAGAAAG*CUCACUG

Length

34 nucleotides

Bulged bases

8ZFI|1|b|U|1061, 8ZFI|1|b|U|1078, 8ZFI|1|b|U|1081, 8ZFI|1|b|G|1087, 8ZFI|1|b|A|1089, 8ZFI|1|b|A|1090, 8ZFI|1|b|A|1103

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|b|C|1053
8ZFI|1|b|A|1054
8ZFI|1|b|G|1055
8ZFI|1|b|G|1056
8ZFI|1|b|A|1057
8ZFI|1|b|U|1058
8ZFI|1|b|G|1059
8ZFI|1|b|U|1060
8ZFI|1|b|U|1061
8ZFI|1|b|G|1062
8ZFI|1|b|G|1063
*
8ZFI|1|b|C|1076
8ZFI|1|b|A|1077
8ZFI|1|b|U|1078
8ZFI|1|b|C|1079
8ZFI|1|b|A|1080
8ZFI|1|b|U|1081
8ZFI|1|b|U|1082
8ZFI|1|b|U|1083
8ZFI|1|b|A|1084
8ZFI|1|b|A|1085
8ZFI|1|b|A|1086
8ZFI|1|b|G|1087
8ZFI|1|b|A|1088
8ZFI|1|b|A|1089
8ZFI|1|b|A|1090
8ZFI|1|b|G|1091
*
8ZFI|1|b|C|1100
8ZFI|1|b|U|1101
8ZFI|1|b|C|1102
8ZFI|1|b|A|1103
8ZFI|1|b|C|1104
8ZFI|1|b|U|1105
8ZFI|1|b|G|1106

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 8

50S ribosomal protein L36