J3_8ZHB_004

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

8ZHB|1|LA|U|343, 8ZHB|1|LA|A|351, 8ZHB|1|LC|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHB_004 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0461

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8ZHB|1|LA|C|340
8ZHB|1|LA|G|341
8ZHB|1|LA|A|342
8ZHB|1|LA|U|343
8ZHB|1|LA|A|344
8ZHB|1|LA|G|345
8ZHB|1|LA|C|346
8ZHB|1|LA|G|347
8ZHB|1|LA|A|348
8ZHB|1|LA|A|349
8ZHB|1|LA|C|350
8ZHB|1|LA|A|351
8ZHB|1|LA|A|352
8ZHB|1|LA|G|353
8ZHB|1|LA|U|354
8ZHB|1|LA|A|355
8ZHB|1|LA|C|356
*
8ZHB|1|LA|G|363
8ZHB|1|LA|G|364
8ZHB|1|LA|A|365
8ZHB|1|LA|A|366
8ZHB|1|LA|A|367
8ZHB|1|LA|G|368
*
8ZHB|1|LC|C|21
8ZHB|1|LC|U|22
8ZHB|1|LC|U|23
8ZHB|1|LC|G|24

Current chains

Chain LA

25S rRNA (3393-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A

Chain Ll

Large ribosomal subunit protein eL37A

Chain Ln

Large ribosomal subunit protein eL39