J3_8ZHB_006
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8ZHB|1|LA|A|398, 8ZHB|1|LA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHB_006 not in the Motif Atlas
- Homologous match to J3_8CRE_006
- Geometric discrepancy: 0.093
- The information below is about J3_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZHB|1|LA|A|369
8ZHB|1|LA|U|370
8ZHB|1|LA|G|371
8ZHB|1|LA|A|372
8ZHB|1|LA|A|373
8ZHB|1|LA|A|374
8ZHB|1|LA|A|375
8ZHB|1|LA|G|376
8ZHB|1|LA|A|377
8ZHB|1|LA|A|378
8ZHB|1|LA|C|379
*
8ZHB|1|LA|G|390
8ZHB|1|LA|A|391
8ZHB|1|LA|G|392
8ZHB|1|LA|U|393
8ZHB|1|LA|G|394
8ZHB|1|LA|A|395
8ZHB|1|LA|A|396
8ZHB|1|LA|A|397
8ZHB|1|LA|A|398
8ZHB|1|LA|A|399
8ZHB|1|LA|G|400
8ZHB|1|LA|U|401
8ZHB|1|LA|A|402
8ZHB|1|LA|C|403
8ZHB|1|LA|G|404
*
8ZHB|1|LC|C|19
8ZHB|1|LC|U|20
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Ln
- Large ribosomal subunit protein eL39
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