J3_8ZHB_007

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAGACAUGG*CUGG*CAUAAUG

Length

20 nucleotides

Bulged bases

8ZHB|1|LA|A|440, 8ZHB|1|LA|U|441, 8ZHB|1|LA|G|442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|LA|C|435
8ZHB|1|LA|A|436
8ZHB|1|LA|G|437
8ZHB|1|LA|A|438
8ZHB|1|LA|C|439
8ZHB|1|LA|A|440
8ZHB|1|LA|U|441
8ZHB|1|LA|G|442
8ZHB|1|LA|G|443
*
8ZHB|1|LA|C|491
8ZHB|1|LA|U|492
8ZHB|1|LA|G|493
8ZHB|1|LA|G|494
*
8ZHB|1|LA|C|617
8ZHB|1|LA|A|618
8ZHB|1|LA|U|619
8ZHB|1|LA|A|620
8ZHB|1|LA|A|621
8ZHB|1|LA|U|622
8ZHB|1|LA|G|623

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LH

Large ribosomal subunit protein eL6B

Chain LR

Large ribosomal subunit protein uL22A

Chain Lg

Large ribosomal subunit protein eL32

Chain Lh

Large ribosomal subunit protein eL33A