J3_8ZHB_016
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 8ZHB|1|LA|C|1555, 8ZHB|1|LA|A|1557, 8ZHB|1|LA|C|1580, 8ZHB|1|LA|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHB|1|LA|A|1536
8ZHB|1|LA|G|1537
8ZHB|1|LA|A|1538
8ZHB|1|LA|U|1539
8ZHB|1|LA|G|1540
8ZHB|1|LA|G|1541
*
8ZHB|1|LA|C|1550
8ZHB|1|LA|G|1551
8ZHB|1|LA|U|1552
8ZHB|1|LA|U|1553
8ZHB|1|LA|U|1554
8ZHB|1|LA|C|1555
8ZHB|1|LA|A|1556
8ZHB|1|LA|A|1557
8ZHB|1|LA|A|1558
8ZHB|1|LA|G|1559
*
8ZHB|1|LA|C|1578
8ZHB|1|LA|A|1579
8ZHB|1|LA|C|1580
8ZHB|1|LA|C|1581
8ZHB|1|LA|A|1582
8ZHB|1|LA|U|1583
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Ll
- Large ribosomal subunit protein eL37A
Coloring options: