J3_8ZHB_017

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUUCA*UAACU*AGGAAUA

Length

18 nucleotides

Bulged bases

8ZHB|1|LA|C|1627, 8ZHB|1|LA|U|1628, 8ZHB|1|LA|A|1812, 8ZHB|1|LA|A|1813, 8ZHB|1|LA|U|1814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|LA|U|1626
8ZHB|1|LA|C|1627
8ZHB|1|LA|U|1628
8ZHB|1|LA|U|1629
8ZHB|1|LA|C|1630
8ZHB|1|LA|A|1631
*
8ZHB|1|LA|U|1640
8ZHB|1|LA|A|1641
8ZHB|1|LA|A|1642
8ZHB|1|LA|C|1643
8ZHB|1|LA|U|1644
*
8ZHB|1|LA|A|1809
8ZHB|1|LA|G|1810
8ZHB|1|LA|G|1811
8ZHB|1|LA|A|1812
8ZHB|1|LA|A|1813
8ZHB|1|LA|U|1814
8ZHB|1|LA|A|1815

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lb

Large ribosomal subunit protein eL27A

Chain Li

Large ribosomal subunit protein eL34A

Chain Lm

Large ribosomal subunit protein eL38