J3_8ZHB_018

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGACG*CC*GAAAAUC

Length

15 nucleotides

Bulged bases

8ZHB|1|LA|A|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|LA|G|1652
8ZHB|1|LA|A|1653
8ZHB|1|LA|G|1654
8ZHB|1|LA|A|1655
8ZHB|1|LA|C|1656
8ZHB|1|LA|G|1657
*
8ZHB|1|LA|C|1790
8ZHB|1|LA|C|1791
*
8ZHB|1|LA|G|1795
8ZHB|1|LA|A|1796
8ZHB|1|LA|A|1797
8ZHB|1|LA|A|1798
8ZHB|1|LA|A|1799
8ZHB|1|LA|U|1800
8ZHB|1|LA|C|1801

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Li

Large ribosomal subunit protein eL34A

Chain Lr

Large ribosomal subunit protein eL43A