J3_8ZHB_020

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGCU*ACGUUCUAGCAUUCAAG*UGAUC

Length

27 nucleotides

Bulged bases

8ZHB|1|LA|C|2547, 8ZHB|1|LA|G|2548, 8ZHB|1|LA|U|2549, 8ZHB|1|LA|U|2550, 8ZHB|1|LA|C|2551, 8ZHB|1|LA|U|2552, 8ZHB|1|LA|A|2553, 8ZHB|1|LA|C|2559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|LA|G|2527
8ZHB|1|LA|A|2528
8ZHB|1|LA|G|2529
8ZHB|1|LA|C|2530
8ZHB|1|LA|U|2531
*
8ZHB|1|LA|A|2546
8ZHB|1|LA|C|2547
8ZHB|1|LA|G|2548
8ZHB|1|LA|U|2549
8ZHB|1|LA|U|2550
8ZHB|1|LA|C|2551
8ZHB|1|LA|U|2552
8ZHB|1|LA|A|2553
8ZHB|1|LA|G|2554
8ZHB|1|LA|C|2555
8ZHB|1|LA|A|2556
8ZHB|1|LA|U|2557
8ZHB|1|LA|U|2558
8ZHB|1|LA|C|2559
8ZHB|1|LA|A|2560
8ZHB|1|LA|A|2561
8ZHB|1|LA|G|2562
*
8ZHB|1|LA|U|2577
8ZHB|1|LA|G|2578
8ZHB|1|LA|A|2579
8ZHB|1|LA|U|2580
8ZHB|1|LA|C|2581

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LJ

Large ribosomal subunit protein eL8A

Chain LZ

Large ribosomal subunit protein uL23

Chain Lb

Large ribosomal subunit protein eL27A

Chain Le

Large ribosomal subunit protein eL30

Chain Li

Large ribosomal subunit protein eL34A

Chain Lr

Large ribosomal subunit protein eL43A