J3_8ZHB_021
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8ZHB|1|LA|C|2759, 8ZHB|1|LA|C|2796
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHB_021 not in the Motif Atlas
- Homologous match to J3_8CRE_021
- Geometric discrepancy: 0.0553
- The information below is about J3_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZHB|1|LA|G|2650
8ZHB|1|LA|U|2651
8ZHB|1|LA|C|2652
*
8ZHB|1|LA|G|2753
8ZHB|1|LA|C|2754
8ZHB|1|LA|C|2755
8ZHB|1|LA|U|2756
8ZHB|1|LA|A|2757
8ZHB|1|LA|U|2758
8ZHB|1|LA|C|2759
8ZHB|1|LA|G|2760
8ZHB|1|LA|A|2761
8ZHB|1|LA|U|2762
8ZHB|1|LA|C|2763
8ZHB|1|LA|C|2764
*
8ZHB|1|LA|G|2792
8ZHB|1|LA|G|2793
8ZHB|1|LA|U|2794
8ZHB|1|LA|G|2795
8ZHB|1|LA|C|2796
8ZHB|1|LA|C|2797
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lq
- Large ribosomal subunit protein eL42A
- Chain Tb
- Transfer RNA; tRNA
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