Loop J3_8ZHB

3D structure

PDB id: 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
Description: 80S ribosome with A/A P/E tRNA and mRNA of WNV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: CACAAUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUUUGCG
Length: 44 nucleotides
Bulged bases: 8ZHB|1|LA|A|3164, 8ZHB|1|LA|A|3171, 8ZHB|1|LA|G|3172, 8ZHB|1|LA|A|3214, 8ZHB|1|LA|G|3215, 8ZHB|1|LA|C|3216, 8ZHB|1|LA|G|3218, 8ZHB|1|LA|A|3267, 8ZHB|1|LA|U|3269, 8ZHB|1|LA|C|3271, 8ZHB|1|LA|U|3280, 8ZHB|1|LA|C|3284
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8ZHB|1|LA|C|3163
8ZHB|1|LA|A|3164
8ZHB|1|LA|C|3165
8ZHB|1|LA|A|3166
8ZHB|1|LA|A|3167
8ZHB|1|LA|U|3168
8ZHB|1|LA|A|3169
8ZHB|1|LA|U|3170
8ZHB|1|LA|A|3171
8ZHB|1|LA|G|3172
8ZHB|1|LA|A|3173
8ZHB|1|LA|U|3174
8ZHB|1|LA|G|3175
*
8ZHB|1|LA|C|3211
8ZHB|1|LA|A|3212
8ZHB|1|LA|U|3213
8ZHB|1|LA|A|3214
8ZHB|1|LA|G|3215
8ZHB|1|LA|C|3216
8ZHB|1|LA|A|3217
8ZHB|1|LA|G|3218
8ZHB|1|LA|G|3219
*
8ZHB|1|LA|C|3264
8ZHB|1|LA|G|3265
8ZHB|1|LA|A|3266
8ZHB|1|LA|A|3267
8ZHB|1|LA|U|3268
8ZHB|1|LA|U|3269
8ZHB|1|LA|G|3270
8ZHB|1|LA|C|3271
8ZHB|1|LA|A|3272
8ZHB|1|LA|A|3273
8ZHB|1|LA|U|3274
8ZHB|1|LA|G|3275
8ZHB|1|LA|U|3276
8ZHB|1|LA|C|3277
8ZHB|1|LA|A|3278
8ZHB|1|LA|U|3279
8ZHB|1|LA|U|3280
8ZHB|1|LA|U|3281
8ZHB|1|LA|U|3282
8ZHB|1|LA|G|3283
8ZHB|1|LA|C|3284
8ZHB|1|LA|G|3285

Current chains

Chain LA: 25S rRNA (3393-MER)

Nearby chains

Chain LC: 5.8S ribosomal RNA; 5.8S rRNA
Chain LH: Large ribosomal subunit protein eL6B
Chain LO: Large ribosomal subunit protein eL14A
Chain LQ: Large ribosomal subunit protein uL13A
Chain LR: Large ribosomal subunit protein uL22A
Chain Lh: Large ribosomal subunit protein eL33A

J3_8ZHB_024