J3_8ZHB_030
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUAGAUAAAAAAUCAAUG*CUCUUUG*CAUAA
- Length
- 30 nucleotides
- Bulged bases
- 8ZHB|1|S2|A|215, 8ZHB|1|S2|U|216, 8ZHB|1|S2|A|217, 8ZHB|1|S2|A|218, 8ZHB|1|S2|A|219, 8ZHB|1|S2|A|220, 8ZHB|1|S2|A|221, 8ZHB|1|S2|C|224, 8ZHB|1|S2|U|227, 8ZHB|1|S2|U|240, 8ZHB|1|S2|U|241
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHB|1|S2|U|211
8ZHB|1|S2|U|212
8ZHB|1|S2|A|213
8ZHB|1|S2|G|214
8ZHB|1|S2|A|215
8ZHB|1|S2|U|216
8ZHB|1|S2|A|217
8ZHB|1|S2|A|218
8ZHB|1|S2|A|219
8ZHB|1|S2|A|220
8ZHB|1|S2|A|221
8ZHB|1|S2|A|222
8ZHB|1|S2|U|223
8ZHB|1|S2|C|224
8ZHB|1|S2|A|225
8ZHB|1|S2|A|226
8ZHB|1|S2|U|227
8ZHB|1|S2|G|228
*
8ZHB|1|S2|C|237
8ZHB|1|S2|U|238
8ZHB|1|S2|C|239
8ZHB|1|S2|U|240
8ZHB|1|S2|U|241
8ZHB|1|S2|U|242
8ZHB|1|S2|G|243
*
8ZHB|1|S2|C|250
8ZHB|1|S2|A|251
8ZHB|1|S2|U|252
8ZHB|1|S2|A|253
8ZHB|1|S2|A|254
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
Coloring options: