J3_8ZTU_022

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8ZTU|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZTU_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0571

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZTU|1|a|G|297
8ZTU|1|a|G|298
8ZTU|1|a|A|299
8ZTU|1|a|A|300
8ZTU|1|a|G|301
*
8ZTU|1|a|C|316
8ZTU|1|a|G|317
8ZTU|1|a|C|318
8ZTU|1|a|G|319
8ZTU|1|a|A|320
8ZTU|1|a|U|321
8ZTU|1|a|A|322
8ZTU|1|a|C|323
8ZTU|1|a|A|324
8ZTU|1|a|G|325
*
8ZTU|1|a|C|337
8ZTU|1|a|G|338
8ZTU|1|a|U|339
8ZTU|1|a|A|340
8ZTU|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24