J3_8ZTV_022

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8ZTV|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZTV_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0594

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZTV|1|a|G|297
8ZTV|1|a|G|298
8ZTV|1|a|A|299
8ZTV|1|a|A|300
8ZTV|1|a|G|301
*
8ZTV|1|a|C|316
8ZTV|1|a|G|317
8ZTV|1|a|C|318
8ZTV|1|a|G|319
8ZTV|1|a|A|320
8ZTV|1|a|U|321
8ZTV|1|a|A|322
8ZTV|1|a|C|323
8ZTV|1|a|A|324
8ZTV|1|a|G|325
*
8ZTV|1|a|C|337
8ZTV|1|a|G|338
8ZTV|1|a|U|339
8ZTV|1|a|A|340
8ZTV|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24