J3_8ZTV_023

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8ZTV|1|a|U|686, 8ZTV|1|a|A|792, 8ZTV|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZTV_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0552

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8ZTV|1|a|U|683
8ZTV|1|a|G|684
8ZTV|1|a|A|685
8ZTV|1|a|U|686
8ZTV|1|a|C|687
8ZTV|1|a|U|688
8ZTV|1|a|A|689
*
8ZTV|1|a|U|773
8ZTV|1|a|G|774
8ZTV|1|a|G|775
*
8ZTV|1|a|C|791
8ZTV|1|a|A|792
8ZTV|1|a|A|793
8ZTV|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2