3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
9AX7|1|A|U|1212, 9AX7|1|A|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9AX7_011 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.1235
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

9AX7|1|A|C|990
9AX7|1|A|U|991
9AX7|1|A|U|992
9AX7|1|A|G|993
9AX7|1|A|A|994
9AX7|1|A|C|995
9AX7|1|A|A|996
9AX7|1|A|U|997
*
9AX7|1|A|A|1044
9AX7|1|A|C|1045
9AX7|1|A|A|1046
9AX7|1|A|G|1047
*
9AX7|1|A|C|1210
9AX7|1|A|U|1211
9AX7|1|A|U|1212
9AX7|1|A|A|1213
9AX7|1|A|C|1214
9AX7|1|A|G|1215

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain N
30S ribosomal protein S14

Coloring options:


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