J3_9AX8_005

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9AX8|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AX8_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0574

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9AX8|1|A|G|297
9AX8|1|A|G|298
9AX8|1|A|A|299
9AX8|1|A|A|300
9AX8|1|A|G|301
*
9AX8|1|A|C|316
9AX8|1|A|G|317
9AX8|1|A|C|318
9AX8|1|A|G|319
9AX8|1|A|A|320
9AX8|1|A|U|321
9AX8|1|A|A|322
9AX8|1|A|C|323
9AX8|1|A|A|324
9AX8|1|A|G|325
*
9AX8|1|A|C|337
9AX8|1|A|G|338
9AX8|1|A|U|339
9AX8|1|A|A|340
9AX8|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24