J3_9AX8_006

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9AX8|1|A|U|686, 9AX8|1|A|A|792, 9AX8|1|A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AX8_006 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0724

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9AX8|1|A|U|683
9AX8|1|A|G|684
9AX8|1|A|A|685
9AX8|1|A|U|686
9AX8|1|A|C|687
9AX8|1|A|U|688
9AX8|1|A|A|689
*
9AX8|1|A|U|773
9AX8|1|A|G|774
9AX8|1|A|G|775
*
9AX8|1|A|C|791
9AX8|1|A|A|792
9AX8|1|A|A|793
9AX8|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain 9

50S ribosomal protein L2