J3_9AZS_002

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9AZS|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZS|1|L5|C|196
9AZS|1|L5|A|197
9AZS|1|L5|A|198
9AZS|1|L5|G|199
*
9AZS|1|L5|C|215
9AZS|1|L5|C|216
9AZS|1|L5|C|217
9AZS|1|L5|A|218
9AZS|1|L5|G|219
9AZS|1|L5|C|220
9AZS|1|L5|C|221
9AZS|1|L5|C|222
9AZS|1|L5|G|223
9AZS|1|L5|U|224
9AZS|1|L5|G|225
9AZS|1|L5|G|226
9AZS|1|L5|A|227
9AZS|1|L5|C|228
*
9AZS|1|L5|G|240
9AZS|1|L5|G|241
9AZS|1|L5|U|242
9AZS|1|L5|A|243
9AZS|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26