J3_9B00_010
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCAUAG*CGC*GUCG
- Length
- 13 nucleotides
- Bulged bases
- 9B00|1|1B|U|14, 9B00|1|1B|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B00|1|1B|C|11
9B00|1|1B|C|12
9B00|1|1B|A|13
9B00|1|1B|U|14
9B00|1|1B|A|15
9B00|1|1B|G|16
*
9B00|1|1B|C|68
9B00|1|1B|G|69
9B00|1|1B|C|70
*
9B00|1|1B|G|107
9B00|1|1B|U|108
9B00|1|1B|C|109
9B00|1|1B|G|110
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1S
- 50S ribosomal protein L18
- Chain 1Z
- 50S ribosomal protein L25
Coloring options: