J3_9B0F_016

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9B0F|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0F|1|L5|A|2551
9B0F|1|L5|G|2552
9B0F|1|L5|A|2553
9B0F|1|L5|U|2554
9B0F|1|L5|G|2555
*
9B0F|1|L5|C|2572
9B0F|1|L5|A|2573
9B0F|1|L5|G|2574
9B0F|1|L5|U|2575
*
9B0F|1|L5|A|2757
9B0F|1|L5|G|2758
9B0F|1|L5|G|2759
9B0F|1|L5|G|2760
9B0F|1|L5|U|2761
9B0F|1|L5|G|2762
9B0F|1|L5|U|2763
9B0F|1|L5|A|2764
9B0F|1|L5|A|2765
9B0F|1|L5|A|2766
9B0F|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27