J3_9B0N_029
3D structure
- PDB id
- 9B0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.92 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 9B0N|1|S2|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B0N_029 not in the Motif Atlas
- Homologous match to J3_8CRE_072
- Geometric discrepancy: 0.0751
- The information below is about J3_8CRE_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9B0N|1|S2|A|40
9B0N|1|S2|G|41
9B0N|1|S2|A|42
9B0N|1|S2|U|43
9B0N|1|S2|U|44
9B0N|1|S2|A|45
9B0N|1|S2|A|46
9B0N|1|S2|G|47
*
9B0N|1|S2|C|479
9B0N|1|S2|G|480
9B0N|1|S2|C|481
9B0N|1|S2|G|482
9B0N|1|S2|C|483
9B0N|1|S2|A|484
9B0N|1|S2|A|485
9B0N|1|S2|A|486
9B0N|1|S2|U|487
*
9B0N|1|S2|A|512
9B0N|1|S2|G|513
9B0N|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CF
- Elongation factor 1-alpha 1
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
Coloring options: