J3_9B0P_006

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9B0P|1|L5|C|704, 9B0P|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0P|1|L5|C|451
9B0P|1|L5|A|452
9B0P|1|L5|G|453
9B0P|1|L5|U|454
9B0P|1|L5|C|455
*
9B0P|1|L5|G|701
9B0P|1|L5|U|702
9B0P|1|L5|G|703
9B0P|1|L5|C|704
9B0P|1|L5|G|705
*
9B0P|1|L5|C|1292
9B0P|1|L5|G|1293
9B0P|1|L5|A|1294
9B0P|1|L5|C|1295
9B0P|1|L5|G|1296

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a

Chain Lr

60S ribosomal protein L28