J3_9B0P_007

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9B0P|1|L5|G|959, 9B0P|1|L5|C|962, 9B0P|1|L5|G|965, 9B0P|1|L5|C|967, 9B0P|1|L5|C|968, 9B0P|1|L5|C|969, 9B0P|1|L5|U|971, 9B0P|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0P|1|L5|C|712
9B0P|1|L5|C|713
*
9B0P|1|L5|G|955
9B0P|1|L5|A|956
9B0P|1|L5|G|957
9B0P|1|L5|G|958
9B0P|1|L5|G|959
9B0P|1|L5|A|960
9B0P|1|L5|G|961
9B0P|1|L5|C|962
9B0P|1|L5|G|963
9B0P|1|L5|A|964
9B0P|1|L5|G|965
9B0P|1|L5|A|966
9B0P|1|L5|C|967
9B0P|1|L5|C|968
9B0P|1|L5|C|969
9B0P|1|L5|G|970
9B0P|1|L5|U|971
9B0P|1|L5|C|972
9B0P|1|L5|G|973
9B0P|1|L5|C|974
9B0P|1|L5|C|975
9B0P|1|L5|G|976
*
9B0P|1|L5|C|1278
9B0P|1|L5|A|1279
9B0P|1|L5|C|1280
9B0P|1|L5|G|1281
9B0P|1|L5|G|1282
9B0P|1|L5|G|1283
9B0P|1|L5|G|1284

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32