3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
9B0P|1|L5|A|1534, 9B0P|1|L5|G|1641, 9B0P|1|L5|A|1642
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B0P_008 not in the Motif Atlas
Homologous match to J3_8CRE_009
Geometric discrepancy: 0.0596
The information below is about J3_8CRE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

9B0P|1|L5|U|1531
9B0P|1|L5|G|1532
9B0P|1|L5|A|1533
9B0P|1|L5|A|1534
9B0P|1|L5|C|1535
9B0P|1|L5|U|1536
9B0P|1|L5|A|1537
*
9B0P|1|L5|U|1622
9B0P|1|L5|A|1623
9B0P|1|L5|G|1624
*
9B0P|1|L5|C|1640
9B0P|1|L5|G|1641
9B0P|1|L5|A|1642
9B0P|1|L5|A|1643

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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