J3_9B0P_025

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9B0P|1|L5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0P|1|L5|C|4970
9B0P|1|L5|A|4971
9B0P|1|L5|U|4972
*
9B0P|1|L5|G|4986
9B0P|1|L5|C|4987
9B0P|1|L5|U|4988
9B0P|1|L5|U|4989
9B0P|1|L5|C|4990
9B0P|1|L5|U|4991
*
9B0P|1|L5|A|5060
9B0P|1|L5|A|5061
9B0P|1|L5|G|5062
9B0P|1|L5|G|5063

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31