J3_9B0Q_042
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B0Q_042 not in the Motif Atlas
- Geometric match to J3_4V9F_011
- Geometric discrepancy: 0.1214
- The information below is about J3_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9B0Q|1|l5|U|380
9B0Q|1|l5|U|381
9B0Q|1|l5|G|382
9B0Q|1|l5|A|383
9B0Q|1|l5|A|384
9B0Q|1|l5|A|385
9B0Q|1|l5|A|386
9B0Q|1|l5|G|387
*
9B0Q|1|l5|C|414
9B0Q|1|l5|G|415
*
9B0Q|1|l8|C|19
9B0Q|1|l8|A|20
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
- Chain l8
- RNA (156-MER)5.8S rRNA [Homo sapiens]
Nearby chains
- Chain lC
- 60S ribosomal protein L4
- Chain lY
- 60S ribosomal protein L26
- Chain ll
- 60S ribosomal protein L39
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