J3_9B0W_006

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9B0W|1|L5|C|704, 9B0W|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0W|1|L5|C|451
9B0W|1|L5|A|452
9B0W|1|L5|G|453
9B0W|1|L5|U|454
9B0W|1|L5|C|455
*
9B0W|1|L5|G|701
9B0W|1|L5|U|702
9B0W|1|L5|G|703
9B0W|1|L5|C|704
9B0W|1|L5|G|705
*
9B0W|1|L5|C|1292
9B0W|1|L5|G|1293
9B0W|1|L5|A|1294
9B0W|1|L5|C|1295
9B0W|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a