J3_9B4Z_002

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

9B4Z|1|AA|C|48, 9B4Z|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_002 not in the Motif Atlas

Geometric match to J3_8B0X_027

Geometric discrepancy: 0.0578

The information below is about J3_8B0X_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9B4Z|1|AA|G|46
9B4Z|1|AA|C|47
9B4Z|1|AA|C|48
9B4Z|1|AA|U|49
9B4Z|1|AA|A|50
9B4Z|1|AA|A|51
9B4Z|1|AA|C|52
*
9B4Z|1|AA|G|359
9B4Z|1|AA|G|360
9B4Z|1|AA|G|361
9B4Z|1|AA|G|362
9B4Z|1|AA|A|363
9B4Z|1|AA|A|364
9B4Z|1|AA|U|365
9B4Z|1|AA|A|366
9B4Z|1|AA|U|367
*
9B4Z|1|AA|A|393
9B4Z|1|AA|G|394
9B4Z|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16